PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 26074.1 Da PI: 6.0189 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 207 | 229 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ F+++ ++ +H+++H Pahal.E03076.1 207 YTCKLCDAIFTTPQTYYSHMSLH 229 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.746 | 207 | 234 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 209 | 229 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDPSNYPTKD ISFGQSDDNI SPLHQRYYSN SEAPPPQPHP GFAHAPPAST IASAEPVQSP 60 VENEQELMRS FLTIPVGKFL SVDERVRVSS MEPPSITSLL QGNKTAILHA HLDIAGALDP 120 DPIFQDPASN IPKEKEMRKL LGSSSSHGNS YGKMPYVKPT YFDQSPMSSH VQREQQVPSV 180 VMQSSNSDDA IRAAINSTFE FTEVQRYTCK LCDAIFTTPQ TYYSHMSLHN KGMSSN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457384.2 | 3e-65 | uncharacterized protein LOC8060818 | ||||
TrEMBL | A0A2S3HVW3 | 1e-174 | A0A2S3HVW3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00985.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19398 | 6 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03076.1 |