PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03073.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 337aa    MW: 36667.8 Da    PI: 4.6654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03073.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
   Pahal.E03073.1 14 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.43e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l
   Pahal.E03073.1  67 RGNISEEEEEMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.718961IPR017930Myb domain
SuperFamilySSF466892.36E-2911108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002492.4E-161461IPR001005SANT/Myb domain
CDDcd001671.88E-121661No hitNo description
PROSITE profilePS5129425.32362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565115IPR009057Homeodomain-like
SMARTSM007174.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1567112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEILARYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SEEEEEMIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRAADFR  120
DGVVVNVDLS KLPGGGKRRG GRASRGVMAA AKVRKENKGK EKEKGKGKSK VAEAEQQEQL  180
EEDDDMTVST PSSHSQPSAT AQSEEQAQAS ASGVTSDDGP EEDPLALSEE MMSALLGPES  240
PKLEGGPDGS RMDSDSGPSV VVDSDSGPGG PTGDVAQELG DKAIMDWDLM GLDISTADDM  300
WDQLVWDYAD MDVVVPGGGH HQQEEVMSDL FFLDSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24121155107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794110.0HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819210.10.0myb-related protein P-like
SwissprotP278981e-74MYBP_MAIZE; Myb-related protein P
TrEMBLA0A2S3HWG00.0A0A2S3HWG0_9POAL; Uncharacterized protein
STRINGSi002107m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-71myb domain protein 12
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]