PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02889.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 293aa    MW: 32086.7 Da    PI: 6.4331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02889.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-16119165455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Pahal.E02889.2 119 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 165
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-21112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-20112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-16118169No hitNo description
PfamPF000108.0E-14119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-18121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDEQGFAGFG GGRGAVPVRD QGREAMALLQ HQHHHQRRRQ LEVEEEEEEE EEEEARRQMF  60
AGVAAFPAAA LGLGHGQQAY YGEEAGGLGD SDAGGSEPEP AQARQRGGSG SKRSRAAEVH  120
NLSEKRRRSK INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMRNGVYLN  180
PPYLSGALEP AQASQMFAAL GGANVTASSS GAVMPPVNQK RRFHLESSQS HLRTFRMPES  240
SEMMLRGEIM AKHQLSSAQE RVSLPGNDMN PIRQESSIVN ADQFDGCSRN KE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353601e-162BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
GenBankKJ7268601e-162KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811541.10.0transcription factor SPATULA-like isoform X2
TrEMBLA0A2S3HLJ40.0A0A2S3HLJ4_9POAL; Uncharacterized protein
STRINGPavir.J38250.1.p1e-133(Panicum virgatum)
STRINGSb10g004500.11e-133(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-36bHLH family protein