PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02884.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 403aa    MW: 44988.8 Da    PI: 6.7978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02884.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.7e-07150173123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C  Cg++F+++ +L+rH r  H
  Pahal.E02884.2 150 YSCAVCGRRFPTRPDLTRHFRQlH 173
                     99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-5148176No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4149176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-4150173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256150178IPR007087Zinc finger, C2H2
PROSITE patternPS000280152173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10108.7E-5215303IPR029060PIN domain-like
CDDcd061677.29E-8216300No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPLALPFLHL PPNSAPFHPF RIHRTQQPHP HISLRTRRPS VASAAAEAEN PSASVDVDMV  60
RGRDGVWMAR SPTVVVLWDL DNKPPRGPPF PAATSLIAAA SLLGRVVSIS AFANRHAFTH  120
LPAWVAAERR DRRALDRAER AGLAAPSVPY SCAVCGRRFP TRPDLTRHFR QLHERERNKK  180
LSRLRSLKGK KRQKFRERFI TGNTKYEDAA RELLTPKVGY GLATELRRAG VHVRTVSDKP  240
QAADHALKRQ VKHSVACGVD WMVLVSDDSD FTDTVRNARA ADLKTVVVGD VCRALGKVAD  300
IWLPWDRVEN GEVDEEMLKS CTLPEFGEDQ EDQRGEEFRL DWDTSELDDV VDEIVGMRTT  360
LLGARTISAF ADEDVTDGIF GVELNGDSMF WSSDDEEEDG YL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810356.10.0uncharacterized protein LOC112888367
TrEMBLA0A2S3HLH70.0A0A2S3HLH7_9POAL; Uncharacterized protein
STRINGPavir.Da02143.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.14e-94C2H2-like zinc finger protein