PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E02858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HSF | ||||||||
Protein Properties | Length: 377aa MW: 41137.6 Da PI: 4.8603 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.2 | 7e-35 | 59 | 149 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw gnsfvv+d + fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g++ell++ Pahal.E02858.1 59 FLTKTYDVVDDPNTDTVVSWGFAGNSFVVWDANAFANVILPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRELLKT 144 9****************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 ikr++ Pahal.E02858.1 145 IKRRR 149 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.3E-57 | 55 | 148 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-37 | 55 | 148 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.93E-34 | 55 | 148 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.7E-31 | 59 | 148 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 59 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 98 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.5E-19 | 110 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MDPFHGIVKE EDFEFDFDYT GASAGGAPPG ALAASSWAVA APELPRPMEG LGEVGPTPFL 60 TKTYDVVDDP NTDTVVSWGF AGNSFVVWDA NAFANVILPR YFKHSNFSSF VRQLNTYGFR 120 KVDPDRWEFA NEGFLRGQRE LLKTIKRRRP PLSPSSQQGQ AQDACLEVGQ FGREGEVHRL 180 QRDKGILLAE VVKLRQEQQA TRAQMQAMEE RITTAEQKQQ HMTVFLARAL KNPSFLRMLV 240 DRQGLGGRQR ELEDALSKKR HRPIEYLRRD GESSGSAATE AAVGDYISGL PAGANGVAVA 300 DDGKGRRDGT GGGEDTESFW VELLSLGLEE KHREGGGGGE VNGSGSDVDN DVDDDVEVLV 360 QSIYHLNPNP GSPSGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-27 | 50 | 148 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-27 | 50 | 148 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-27 | 50 | 148 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 147 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085816 | 0.0 | BT085816.2 Zea mays full-length cDNA clone ZM_BFc0067H20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817582.1 | 0.0 | heat stress transcription factor A-2a-like | ||||
Swissprot | Q84MN7 | 1e-150 | HFA2A_ORYSJ; Heat stress transcription factor A-2a | ||||
TrEMBL | A0A2S3HV09 | 0.0 | A0A2S3HV09_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00582.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 9e-80 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E02858.1 |
Publications ? help Back to Top | |||
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