PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E02849.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 274aa MW: 32096.7 Da PI: 9.751

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E02849.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.3	8.8e-12	101	179	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 n Y++ F v + +++k+ +k+ ++C+++ k++e k+ +k+r++ ++ t+Ck k+ v ++ dgk + t+++l HnH+l+ Pahal.E02849.1 101 NVYGQLYRFAVYRGRNYKN------KKYFLMCNRSKKAKEPKNI-QKKRKRYIVKGTNCKMKVIVALQ-DGKCRFTDVDLVHNHDLV 179 67999999*****9999......5789**999998887.9999999************.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-8	102	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MLVITTSVEL NQSEEVNRVP KIKDIDDEMN AEKEIERNEN CHQDDLDVSE ENLEMSNDNG 60 EGTVAEDDEY LFPNPDEAEG MKKPLIGMSF DTIDEAHKIV NVYGQLYRFA VYRGRNYKNK 120 KYFLMCNRSK KAKEPKNIQK KRKRYIVKGT NCKMKVIVAL QDGKCRFTDV DLVHNHDLVS 180 SPALTKFFIS HRYMSEEEKN FSRILQEARI KPRRIMQIFK KMKGSFRYVN FGKTNINNLK 240 QADRRARLRN SDIDSTMVFV RKMQKRNQVS MTQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	PKNIQKKRK
2	207	215	ARIKPRRIM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825589.1	1e-67	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8IMD6	0.0	A0A2T8IMD6_9POAL; Uncharacterized protein
STRING	Pavir.J10440.1.p	1e-97	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-09	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.E02849.1