PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.E02820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28917.9 Da PI: 7.1635 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.9 | 2.6e-21 | 29 | 117 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +raetrt+C+ ++ + +++ +++++v++l leHnH l+ Pahal.E02820.1 29 FWISYGGQKGFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKCPRAETRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 117 999****************************************999.999***************9888777***************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-16 | 29 | 116 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MEENREGLIY SLLPQVGMEF NTIDEAWMFW ISYGGQKGFE VRKMYTNKRK SDGKVRSCRY 60 VCANEGHRKK DKRDHLTKCP RAETRTDCQV RMGLIMDREK ETYKVADLIL EHNHMLQLPQ 120 TSHLMVSQRK ISELQGFEIE TADDAGIGPK AAHELACVQV GGSSNLSYTL RDHKNYLRAK 180 RQREMAYGQA GSMLMYFQDK IAENPSFQYA LQMDIEEQIA NIFWVDAKML TDYAYFGDVV 240 SFDTTFGTNK * |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB108421 | 0.0 | AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence. | |||
GenBank | AC077693 | 0.0 | AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876513.1 | 1e-168 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2T8KLJ4 | 0.0 | A0A2T8KLJ4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8KLL2 | 0.0 | A0A2T8KLL2_9POAL; Uncharacterized protein | ||||
STRING | OS10T0571900-00 | 1e-169 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-39 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.E02820.1 |