PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02691.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 301aa    MW: 31737.6 Da    PI: 5.7917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02691.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-304106197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                     +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+p ++ r+++++sl+yeA+ r+ +PvyG+vg+++++q+q +q
  Pahal.E02691.1   4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADHlRPAVFRSLLYEACGRIVNPVYGSVGLLWSGQWQACQ 98 
                     6*****************************************************88877************************************ PP

          DUF260  90 lkaelall 97 
                     +++e++l 
  Pahal.E02691.1  99 AAVEAVLK 106
                     **999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5213110IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAAPAD  60
HLRPAVFRSL LYEACGRIVN PVYGSVGLLW SGQWQACQAA VEAVLKGGPV VQVDTASDAA  120
AAPPLLGARA PGAAAYDIRH VAKDPDAAAA ADLLRVARGG RSRFKRASSS TSSKPHHNKR  180
ASPSPPLRQQ QEPEELEPEP MVVEHDEESA GSHDHHVQGS VDTDVEAGSH VSQTEAEAEP  240
QSHAAPVSSQ VLAEDQEEED VGLELTLGLE PAAARQEARS ARCDLSAASS LIGLRLELPA  300
*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-156EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-156KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817459.10.0LOB domain-containing protein 40-like
TrEMBLA0A2S3HUY30.0A0A2S3HUY3_9POAL; Uncharacterized protein
STRINGPavir.Eb02390.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-57LOB domain-containing protein 41