PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02447.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23498.9 Da    PI: 7.2638
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02447.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.4e-131159149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie+++nr+ tf kRr g++K  + LS L++a+v +++  ++ ++  +
  Pahal.E02447.1 11 KFIEDERNRSLTFFKRRSGLFKAVSDLSALTGARVVMVLECENERFSSF 59
                    79************************************99999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-8162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.881363IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-14673IPR002100Transcription factor, MADS-box
PfamPF003192.2E-151259IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MPRKARRSGV KFIEDERNRS LTFFKRRSGL FKAVSDLSAL TGARVVMVLE CENERFSSFG  60
TPKADPIVDA FLSGDAPTES DTSEEQKAVI INLQNELFQL EKDKAMEDKW KKENMLRAKE  120
IQGTSRKAKY VYGKVEDLDA TELYEMYHEL SRIKQEISDR LPWFRSMPSN VATLPISVDG  180
CRVEKAMLVM IQKENLGDLN FPWY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815418.11e-126agamous-like MADS-box protein AGL62
TrEMBLA0A2T8IL331e-125A0A2T8IL33_9POAL; Uncharacterized protein
STRINGPavir.Eb02038.1.p2e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-13AGAMOUS-like 62