PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E02355.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 106aa MW: 11930.2 Da PI: 9.4636

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E02355.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.4e-10	15	62	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT Ed+ + +a + + ++ +W+ +ar+mg +++ +++ ++q + Pahal.E02355.1 15 EWTRGEDKMFERALAVYDTDtpdRWHNVARYMGGTKSVDEVRRHYQLL 62 7********************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.4E-10	12	65	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.597	14	63	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.21E-13	14	70	IPR009057	Homeodomain-like
CDD	cd00167	2.16E-7	15	63	No hit	No description
Pfam	PF00249	3.3E-8	15	61	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MASNSTKLGS SSSSEWTRGE DKMFERALAV YDTDTPDRWH NVARYMGGTK SVDEVRRHYQ 60 LLVRDVAQIE SGGVPFHWYA AAPPPPTLQR GNNRSNRLKY TSELQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-21	12	79	7	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818796.1	2e-74	protein RADIALIS-like 3 isoform X1
Swissprot	Q1A173	2e-26	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A2T7DJA1	5e-73	A0A2T7DJA1_9POAL; Uncharacterized protein
STRING	Pavir.Eb01659.1.p	3e-56	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	2e-26	RAD-like 6

Link Out ? help Back to Top
Phytozome	Pahal.E02355.1