PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E02346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27409.1 Da PI: 8.207 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv ++ q+G g+W+ ar g++R +k+c++rw++yl Pahal.E02346.1 16 KGPWTLEEDLVLVGYISQHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ Ed + ++++ lG++ W++Ia++++ gRt++++k++w++ Pahal.E02346.1 69 RGSITPAEDAAIRELHASLGNK-WSKIAEHLP-GRTDNEIKNYWRT 112 7889******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.882 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.31E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.85E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.026 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.38E-11 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRTCGRAGG EPAVRKGPWT LEEDLVLVGY ISQHGEGSWD NLARAAGLNR NGKSCRLRWL 60 NYLRPGVRRG SITPAEDAAI RELHASLGNK WSKIAEHLPG RTDNEIKNYW RTRIQRRPAA 120 SAQQQQAYRA PATAAAIAAS EGASSSSSAS ASHGSSAAGD WWYVEPNHPE QGADRSQKSV 180 AAAAAGVDSG SASSALTRRD SSATAGDGYM KTSYSDRYYS ELSSVAADGV KMVDAESFWN 240 VVDDFWGTLP VPDATF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 10 | 117 | 1 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728193 | 1e-123 | KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815399.1 | 0.0 | myb-related protein 340-like | ||||
TrEMBL | A0A2S3HTL3 | 0.0 | A0A2S3HTL3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01664.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13240 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-55 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E02346.1 |