PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02344.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 264aa    MW: 28728 Da    PI: 9.2608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02344.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-162168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv ++ ++G g+W+  ar  g++R +k+c++rw++yl
   Pahal.E02344.1 21 KGPWTLEEDLILVGYISEHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 68
                     79********************************************97 PP
2Myb_DNA-binding461.2e-1478117546
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      T+ Ed  + ++++ lG++ W++I+++++ gRt++++k++w++
   Pahal.E02344.1  78 TPAEDAAIRQLHATLGNK-WSKISKHLP-GRTDNEIKNYWRT 117
                      999***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3441672IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-191671IPR009057Homeodomain-like
SuperFamilySSF466894.08E-3019115IPR009057Homeodomain-like
SMARTSM007177.2E-132070IPR001005SANT/Myb domain
PfamPF002492.2E-142168IPR001005SANT/Myb domain
CDDcd001672.62E-102368No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2372122IPR009057Homeodomain-like
PROSITE profilePS5129417.91173123IPR017930Myb domain
SMARTSM007174.2E-1373121IPR001005SANT/Myb domain
CDDcd001676.64E-1278117No hitNo description
PfamPF002492.4E-1378117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATRVAVSTR GRAGDQPAVR KGPWTLEEDL ILVGYISEHG EGSWDNLARA AGLNRNGKSC  60
RLRWLNYLRP GVRHGGITPA EDAAIRQLHA TLGNKWSKIS KHLPGRTDNE IKNYWRTRIQ  120
KKPAAAKTTP RQQQQPAVSE GASSDAGDYY WCSTKPDPYQ QAPYYFQKAA MAAATTPAAA  180
AVSGEGASSA LTSQDSPTAG DWRIQQSSFP DYSELMRLVA GHGETAVGVD ALTPPHFFSS  240
QFSDTFWNAV ENFWETKPVA GAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-2531229127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815397.10.0transcription factor MYB57-like
SwissprotQ9LK951e-54MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A2S3HTK40.0A0A2S3HTK4_9POAL; Uncharacterized protein
STRINGPavir.Eb01665.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-55myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]