PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02278.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 486aa    MW: 50047 Da    PI: 7.7798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02278.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0599119323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     Cp Cgk F+++     H+++H
  Pahal.E02278.1  99 CPVCGKEFRSQKAVCGHMKVH 119
                     *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.001397119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.78597120IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139122.5E-499119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-7307381No hitNo description
PfamPF139126.5E-5307331IPR007087Zinc finger, C2H2
SMARTSM003550.82307329IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078307334IPR007087Zinc finger, C2H2
PROSITE patternPS000280309329IPR007087Zinc finger, C2H2
PfamPF139121.0E-6358383IPR007087Zinc finger, C2H2
SMARTSM003550.072359381IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014359386IPR007087Zinc finger, C2H2
PROSITE patternPS000280361381IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MCGSSEDRWR RPTSRCHADP RDDEPEEGEV VPGYHSDVDT EEYYNRHSCS SSDSDETISD  60
SNAACSVPPK YGEDTSPCSV AANSAGSSSP VAARAALACP VCGKEFRSQK AVCGHMKVHA  120
IGTHEQGIGE GKGIKRDVAS LASWGGTGKR GCSGLGGRAA ASTNAESYQS VAIVVAEPKI  180
VLQPKPLAFA TPIRNAHSVV RAHDVVNGNA QAQSVVCVHG VRIAQSVARA RGVCNDQCFR  240
PEQQRSVAMD AVVAGPANQP SEAVVHPHAA PPTPPAAGEQ SPSSIQRHPT ARPPPPPAAG  300
RQNPNGYTCK ECNEWFPMHQ GLGGHVAAHR SREVAAAAEG TLEDGAVACR RNAKPEKAHV  360
CKVCGAAFPG GVQLGGHMRK HYAGPPIVPN KKRRLVQPPV PPPALTLALP ASAYADGASP  420
APAVDAAAQP GPAPAVERTP EPAPGPAVAG RMLLFGVDIG VRVQKPAAQE GPSATEGPAS  480
TGGEQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T8IKU70.0A0A2T8IKU7_9POAL; Uncharacterized protein
STRINGPavir.J12116.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-08C2H2 family protein