PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02260.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 365aa    MW: 38674.2 Da    PI: 9.2964
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.51.2e-22226288163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L++e+++l++ ++kl++e+
  Pahal.E02260.1 226 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRSEINKLTESSQKLRMEN 288
                     689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.1E-29193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.3E-17222286No hitNo description
SMARTSM003384.0E-21226290IPR004827Basic-leucine zipper domain
PfamPF001708.5E-21227288IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.599228291IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-11230285No hitNo description
CDDcd147028.99E-21231279No hitNo description
PROSITE patternPS000360233248IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGHDEAVVTQ NSVKAPSPPK DQPAIYPCVD WSAMQAYYGP GVLPPTFFNP GIASGHVPPP  60
FMWGPQKMPP AAFGKPYAAI YPHGGGFLHP FMPLMVNPLS AEPAKSVNSK DNSSSKKLKE  120
IDGAAVSTDS GNSEKTSGDY SLEGSSDGNN QKVSGTPKKR SLDDRTTSGA ETCRASAPNE  180
KPGEPGRLAT LSNVRVTDTA IKPCVSTGSD FRVSVAPSTE WQTKDDKESK RERRKQSNRE  240
SARRSRLRKQ AETEELARKV ELLTAENTSL RSEINKLTES SQKLRMENSA LMEKLADSAS  300
EEASADQQAA AAPPPARVVK NFLSMMDGAG ASRGGGGLRA EHGAPRLRQL LGSGPLAADA  360
VAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242248RRSRLRK
2242249RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817312.10.0G-box-binding factor 3-like
TrEMBLA0A2S3HT970.0A0A2S3HT97_9POAL; Uncharacterized protein
STRINGPavir.Ea02315.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-48G-box binding factor 3