PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02237.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 231aa    MW: 23347 Da    PI: 7.7778
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02237.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA65.65.4e-21113147135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCgtt+TplWR+gp+g+k+LCnaCG++y+k+++
  Pahal.E02237.1 113 CANCGTTSTPLWRNGPRGPKSLCNACGIRYKKEER 147
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-21107164IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.589107143IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-15108147No hitNo description
Gene3DG3DSA:3.30.50.101.0E-17111147IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.67E-14112144No hitNo description
PROSITE patternPS003440113138IPR000679Zinc finger, GATA-type
PfamPF003201.2E-18113147IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGTCGGG CSLMFAASAG DHRSHYYERC GGGGGEAGFG TGSYVGSVDC  60
TLSLGTSSTR RAEAGAARAQ APSGALHWDA APVSSCNNGS SQQEANAAGA RRCANCGTTS  120
TPLWRNGPRG PKSLCNACGI RYKKEERRAA AAAAAPAAMA SDGGVEYAPS YGHARQQQQW  180
GCYGPASFGM VGDAAGEVGG PCLPWGLGVM LSPSPAFGAV REVPSLFQYY *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734645e-47AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012875e-47AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845465e-47DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815390.11e-165GATA transcription factor 15-like
TrEMBLA0A2S3HTF71e-163A0A2S3HTF7_9POAL; Uncharacterized protein
STRINGPavir.Eb02678.1.p2e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-16GATA transcription factor 20