PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02036.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family RAV
Protein Properties Length: 404aa    MW: 42794.1 Da    PI: 10.7663
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02036.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.4e-12130178155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Pahal.E02036.1 130 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 178
                     89****9888.8*********......44**********99*************98 PP
2B395.14.7e-30264356185
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed   g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++
  Pahal.E02036.1 264 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDaAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYRS 356
                     89******************************95556799*******9999***************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-16130186IPR016177DNA-binding domain
CDDcd000183.08E-22130186No hitNo description
PfamPF008476.3E-8130178IPR001471AP2/ERF domain
SMARTSM003804.0E-25131192IPR001471AP2/ERF domain
PROSITE profilePS5103219.625131186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-19131186IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-37259357IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-28262355No hitNo description
SuperFamilySSF1019361.96E-29262356IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-22264368IPR003340B3 DNA binding domain
PfamPF023621.5E-26264357IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733264369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAWRPSPGKT TTRRRPFQPP PTRAPMLYIP RLPPRTPQLS STLQQKQAYA VQEMDSASSL  60
VDDTSSGGAS TDKLRALAAA AAEGATLERM GSGASAVVDA AEPGAEADSG SAGHVGPAAA  120
AGVGGKLPSS KYKGVVPQPN GRWGAQIYER HQRVWLGTFA GEADAARAYD VAAQRFRGRD  180
AVTNFRPLAD ADPDAAAELR FLASRSKAEV VDMLRKHTYF DELAQNKRAF AAAASAPKTS  240
ALAASALSPC SAPPSLAAAR EHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLQLPSAGGE  300
SKGVLLNFED AAAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLQAGDV VGFYRSAAGA  360
GATASSSSPA GCGPAASPPR RPPQRSHRRR RRRRPCGSSA WTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4626135611103DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379394RRPPQRSHRRRRRRRP
2384393RSHRRRRRRR
3387393RRRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278700.0KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819477.10.0AP2/ERF and B3 domain-containing protein Os01g0693400-like
SwissprotQ8RZX91e-161Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A2S3HSS30.0A0A2S3HSS3_9POAL; Uncharacterized protein
STRINGPavir.Ea02092.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-92related to ABI3/VP1 1