PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02015.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 267aa    MW: 28151.5 Da    PI: 8.6507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02015.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-183178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell++av++ G g+W+t +r+ g+ R++k+c++rw +yl
   Pahal.E02015.1 31 RGAWTPEEDELLARAVAREGEGQWRTLPRRAGLLRCGKSCRLRWMNYL 78
                     89******************************99************97 PP
2Myb_DNA-binding48.22.5e-1585129248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+  ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l
   Pahal.E02015.1  85 GPIAADEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 129
                      566689***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8812678IPR017930Myb domain
SuperFamilySSF466892.35E-2828125IPR009057Homeodomain-like
SMARTSM007176.7E-133080IPR001005SANT/Myb domain
PfamPF002492.0E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-213285IPR009057Homeodomain-like
CDDcd001673.17E-113378No hitNo description
PROSITE profilePS5129425.24279133IPR017930Myb domain
SMARTSM007176.2E-1483131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2586134IPR009057Homeodomain-like
PfamPF002491.5E-1388129IPR001005SANT/Myb domain
CDDcd001672.05E-1189129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTRKQPAAAR QRRGGAGGAA GAGATRASLR RGAWTPEEDE LLARAVAREG EGQWRTLPRR  60
AGLLRCGKSC RLRWMNYLRP DIKRGPIAAD EEDLIVRLHR LLGNRWSLIA GRLPGRTDNE  120
IKNYWNSHLS KKLIKRGIDP RTHMPLAAAA AASHSHRDSA AAAAPDKTPP PPEQPSSSSG  180
AGVGGNDGGG SDFPAMMGLG AEVFEGLSDP FCALDAAGRG GFDIGCPMVD DGTFSSFLDS  240
LVSENQLVDY FGDHKDAGGG NDQAGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25291335108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082591e-129AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence.
GenBankD886201e-129D88620.1 Oryza sativa mRNA for OSMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818022.10.0transcription repressor MYB5-like
SwissprotQ388504e-73MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2S3HSM90.0A0A2S3HSM9_9POAL; Uncharacterized protein
STRINGPavir.J31180.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-62myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]