PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01979.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 299aa    MW: 32563.1 Da    PI: 6.3698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01979.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
   Pahal.E01979.1 20 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding482.9e-1573117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
   Pahal.E01979.1  73 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 117
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6051567IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-231770IPR009057Homeodomain-like
SuperFamilySSF466891.14E-2818114IPR009057Homeodomain-like
SMARTSM007172.2E-121969IPR001005SANT/Myb domain
PfamPF002492.0E-142067IPR001005SANT/Myb domain
CDDcd001671.93E-112367No hitNo description
PROSITE profilePS5129424.51768122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2571122IPR009057Homeodomain-like
SMARTSM007172.2E-1472120IPR001005SANT/Myb domain
PfamPF002491.3E-1373117IPR001005SANT/Myb domain
CDDcd001674.32E-1075115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRHAHAGSA AAGVQLKLRK GLWSPEEDEK LYNHIIRYGV GCWSSVPKLA GLQRCGKSCR  60
LRWINYLRPD LKRGSFSQQE EDAIVGLHEI LGNRWSQIAS HLPGRTDNEI KNFWNSCLKK  120
KLRQRGIDPT THKPISANAA AALDQPASQE HKPPPAADSG GFEPKQQQQQ QQQVFDPFPL  180
TDSFGGGFEA AGAALYGHLG GGKQDAAGFV DYSSVLDVSE NLGYGESSSN SSNWNCAPEA  240
GNALDGGEAP LHWASSEEQS LEHKFLLPCH GQQEQSLPHF DFDIGRGAVV GEFNLEFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28181225108B-MYB
1h8a_C8e-281812225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9616180.0EU961618.1 Zea mays clone 237078 myb-related protein Hv33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814550.10.0myb-related protein Hv33-like
SwissprotP200271e-107MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2S3HSS00.0A0A2S3HSS0_9POAL; Uncharacterized protein
STRINGSi005548m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-73myb domain protein 86