PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01952.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 488aa    MW: 51091.6 Da    PI: 8.1379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01952.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13338384455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Pahal.E01952.1 338 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 384
                     799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-3746231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16337388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-15337387No hitNo description
PfamPF000107.7E-11338384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAWSETDAAL FAAVLGRDAA HHLATTPPHL DGPAASAASA PPELLARLQD LVERGGVWAY  60
GIFWQESRGA GRPVLGWGDG HCRDGGAPHD AGEAGAAAAE RSVARKRALL RLHALYGGGD  120
DDEGADYALR LDRVTGAEMY FLASMYFSFT EGAGGPGHAL ASGRHAWAAV DPRPRGAGAG  180
EPAPGWYVRA SLAQSAGLRT VVFLPCKGGV LELGSDVAVR ETPEALRAIQ SALAVAPPAA  240
REECMRIFGK DLSPSGRTPR PQAVGLGVTS DNWAPQLGGH AAASAAAANK EAAKPRPPEP  300
PKSIDFTKPG KAEQAGGEER RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV  360
VPKISKMDKA SLLSDAIAYI QELEDRLRGG GGAAGAGARA ESPAVEVKAM QDEVVLRVTT  420
PLYAHPVSRV FHAIRDAQLS VAASDVAVAD DAVTHTLVLR SPGPEQLTAE TVLAAMSRGM  480
TSATPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26332422282Transcription factor MYC2
5gnj_B4e-26332422282Transcription factor MYC2
5gnj_E4e-26332422282Transcription factor MYC2
5gnj_F4e-26332422282Transcription factor MYC2
5gnj_G4e-26332422282Transcription factor MYC2
5gnj_I4e-26332422282Transcription factor MYC2
5gnj_M4e-26332422282Transcription factor MYC2
5gnj_N4e-26332422282Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319327RRPRKRGRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680150.0EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819579.10.0transcription factor bHLH13-like
TrEMBLA0A2S3HSY90.0A0A2S3HSY9_9POAL; Uncharacterized protein
STRINGPavir.J12952.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-50bHLH family protein