PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01941.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 392aa MW: 40253.7 Da PI: 6.9486

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01941.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.6e-06	279	319	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Pahal.E01941.1 279 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 319 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.91E-10	261	324	No hit	No description
PROSITE profile	PS50888	14.449	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-13	276	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-12	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-10	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDATFGWAGA SHHVDDYFSR QVGCGRFEMD EAFLGACFGQ LQCDGVLPAA GGGDTGACQV 60 SSNRGAFEGG AGMDSDPLAF LGAGTGDAFD AGLLDAALAF TRELGDGGAV STGAMLSSYS 120 GTTGGNISSG ESNNYSGGHD AEVVSPTSIM SPTTAPRPFT HASSHQQALH AKRKVADEYP 180 AGIATSAPAP APLPLPGGAK RRAATSISFG QGAQHGARDP AAAGYEPDME AMAQVKEMIY 240 RAAAMRPVNL GPEIAAAASA EKPRRKNVRI SSDPQTVAAR LRRERVSERL RVLQKLVPGG 300 SKMDTASMLD EAASYLKFLK SQVQALETLG TTSTNSSSTS ISAPSMSPHY NYFGSSSSNP 360 GFLGLARRSS NISPAGYVNP NGSTNTSSKL L*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDATFGWAGA SHHVDDYFSR QVGCGRFEMD EAFLGACFGQ LQCDGVLPAA GGGDTGACQV  60
SSNRGAFEGG AGMDSDPLAF LGAGTGDAFD AGLLDAALAF TRELGDGGAV STGAMLSSYS  120
GTTGGNISSG ESNNYSGGHD AEVVSPTSIM SPTTAPRPFT HASSHQQALH AKRKVADEYP  180
AGIATSAPAP APLPLPGGAK RRAATSISFG QGAQHGARDP AAAGYEPDME AMAQVKEMIY  240
RAAAMRPVNL GPEIAAAASA EKPRRKNVRI SSDPQTVAAR LRRERVSERL RVLQKLVPGG  300
SKMDTASMLD EAASYLKFLK SQVQALETLG TTSTNSSSTS ISAPSMSPHY NYFGSSSSNP  360
GFLGLARRSS NISPAGYVNP NGSTNTSSKL L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	266	EKPRRKN
2	261	266	KPRRKN
3	279	284	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355455	1e-103	AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818336.1	0.0	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	8e-50	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A2S3HSX9	0.0	A0A2S3HSX9_9POAL; Uncharacterized protein
STRING	Pavir.Eb02901.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.E01941.1

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]