PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01832.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 307aa    MW: 32677.9 Da    PI: 4.5277
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01832.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.1e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l   v+++G+  +W + +++ g++R++k+c++rw++yl
   Pahal.E01832.1 14 RGPWSQEEDAVLRSFVERFGNAgNWIALPQRAGLKRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
2Myb_DNA-binding39.91e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l++ +    G++ W+ Ia++++ gRt++++k++w++
   Pahal.E01832.1  69 GGFTDEEDNLILSLYGDIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.322962IPR017930Myb domain
SuperFamilySSF466894.12E-2612109IPR009057Homeodomain-like
SMARTSM007179.1E-101364IPR001005SANT/Myb domain
PfamPF002493.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-221569IPR009057Homeodomain-like
CDDcd001672.66E-71662No hitNo description
PROSITE profilePS5129419.52563117IPR017930Myb domain
SMARTSM007177.2E-1267115IPR001005SANT/Myb domain
PfamPF002491.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2270116IPR009057Homeodomain-like
CDDcd001671.21E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRSPCCDKT KVKRGPWSQE EDAVLRSFVE RFGNAGNWIA LPQRAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDNLIL SLYGDIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLAS  120
TREGRPPPPP ASDDDGSATA ADSRSQDDEA PPPTPPALAN LDDTASETAA AAVDDDALLL  180
KSEHLYAELV GLIEQQSSSL TTSTTGPPSS STGEASSSAA TPSSSSGTSP TTGSSSGSRA  240
TVWPTSMDVH GTTLLSESSS SLFDACYGVV GDDAFGAALL PAYSFQDLLA ASYDEFTAVT  300
QELQYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141167107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-133AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818168.10.0transcription factor MYB4-like
TrEMBLA0A2S3HSN60.0A0A2S3HSN6_9POAL; Uncharacterized protein
STRINGPavir.Eb02926.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.13e-66myb domain protein 87