PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22782.9 Da PI: 6.3716 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.7 | 7.3e-24 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs++gkly y Pahal.E01809.1 9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSTSGKLYHYL 58 79*********************************************996 PP | |||||||
2 | K-box | 29.5 | 3e-11 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 y++++++++++ ++ + el+k ++ e +++e+R + +d e+ ++ L+ Le++Le ++ k+Rs K++ + +i +l + + qee L Pahal.E01809.1 72 YEAATHTKVWTDIRQERRAELEKAEQMCELMEKELRFMTVDDGEQYTVPSLELLEHNLEAAMHKVRSEKDRKIGGEITYLENIIRGRQEERYGLC 166 566778889***********************************************************************999999998888887 PP K-box 96 kkl 98 kl Pahal.E01809.1 167 DKL 169 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-28 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-12 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.982 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP 60 TVPSVKDLVE RYEAATHTKV WTDIRQERRA ELEKAEQMCE LMEKELRFMT VDDGEQYTVP 120 SLELLEHNLE AAMHKVRSEK DRKIGGEITY LENIIRGRQE ERYGLCDKLA HSQALNNDEE 180 AGSTSLSNGL ELKLGFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975046 | 0.0 | EU975046.1 Zea mays clone 465896 MADS-box transcription factor 32 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818300.1 | 1e-144 | MADS-box transcription factor 32 isoform X1 | ||||
Swissprot | Q8S151 | 1e-120 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | A0A2S3HS29 | 1e-143 | A0A2S3HS29_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DHB4 | 1e-143 | A0A2T7DHB4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02653.1.p | 1e-141 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 7e-23 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01809.1 |
Publications ? help Back to Top | |||
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