PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01757.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 270aa    MW: 28990 Da    PI: 9.4449
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01757.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.81.5e-32381302103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k++++++d++++ +++w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++         weF+h+sF +g+ +ll  
  Pahal.E01757.1  38 FVAKTFHMVSDPATDAVVRWGGASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDTDR---------WEFAHESFLRGQAHLLPL 123
                     9********************999******************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i rkk++
  Pahal.E01757.1 124 IVRKKKK 130
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3527121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-4834127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3134127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-163861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-2838127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-167688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1689101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGSECKEHLQ LHAGFGGGGG GAQQNQQQKQ EAAAVAPFVA KTFHMVSDPA TDAVVRWGGA  60
SNTFLVLDPA AFSDYLLPSY FKHRNFASFV RQLNTYGFRK VDTDRWEFAH ESFLRGQAHL  120
LPLIVRKKKK AGCGGRELGE EGEEVRGTIR AVQRLREEQR GMEEELRAMD SRLRAAESRP  180
GQMMAFLGKL ADDPGVVLRA MLAKKEELVA AGKGAPPPLP AVEAPGKRRR VGAGTGAEAA  240
DAGEAAAELA AQGRGAVPFP FSVLGQVFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-253312724129Heat shock factor protein 1
5d5v_B9e-253312724129Heat shock factor protein 1
5d5v_D9e-253312724129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226230KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9540420.0EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819027.10.0heat stress transcription factor C-1b-like
SwissprotQ942D61e-131HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A2S3HRY80.0A0A2S3HRY8_9POAL; Uncharacterized protein
STRINGPavir.J32219.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]