PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01653.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 1463aa    MW: 159843 Da    PI: 7.4426
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01653.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.5e-10697741852
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +  ++ L+ +Fe+++yps++++e LA++lgLt +qV  WF   R
  Pahal.E01653.2 697 GPIVTQKLKVHFEEDPYPSHATKENLAQELGLTFNQVCRWFSSTR 741
                     5667899**********************************8776 PP
2Homeobox32.81.2e-109159511349
                     HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS
        Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49 
                     + L+++Fek++yps++++e LA++lgLt +qV+ WF 
  Pahal.E01653.2 915 QKLKAHFEKDPYPSRSTKESLAQELGLTFNQVSKWFS 951
                     78**********************************7 PP
3PHD41.33.4e-14436490150
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C +Cg+   + +++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C +
  Pahal.E01653.2 436 FCGICGSkdVTLQNDIILCDGaCDRGFHQNCLKPPLLTEDIPPGdeGWLCPACVC 490
                     7******64445********66********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.88E-15427492IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.0E-14432491IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.101434491IPR019787Zinc finger, PHD-finger
CDDcd155042.16E-28436488No hitNo description
SMARTSM002496.5E-12436489IPR001965Zinc finger, PHD-type
PfamPF006282.2E-11436490IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590437488IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003892.5E-10690751IPR001356Homeobox domain
SuperFamilySSF466892.52E-10693746IPR009057Homeodomain-like
CDDcd000862.20E-10694745No hitNo description
PfamPF000462.7E-7698741IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-11701753IPR009057Homeodomain-like
PROSITE profilePS5007112.147704747IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-11897950IPR009057Homeodomain-like
SuperFamilySSF466891.37E-10897955IPR009057Homeodomain-like
PROSITE profilePS5007113.135900960IPR001356Homeobox domain
SMARTSM003896.7E-11902964IPR001356Homeobox domain
CDDcd000863.19E-11909958No hitNo description
PfamPF000463.6E-8915951IPR001356Homeobox domain
PROSITE patternPS000270935958IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1463 aa     Download sequence    Send to blast
MGRKGSEVSP SKRYPLRSAH GSGRVLRSAS AKDNKACNEP PNASAAAQSA VSKRRNGSPS  60
VRPNNSVRVL RSASKNKDDA CSEPLNDWTT AKPAANERKS ASPSHMGSTT NTVRVLRSAL  120
KSKDGVCSEP ITNRTAGEPA ANKRKNVSPS KLRSPSNSVR VLLSASKYKE ETYTEPLNDN  180
TAVDPGTNRR KIASPSKVGS PISPNNTVRV LRSALKSKNE ACSEPLNDST VGQPTVKRRK  240
TGSPLKVASP VSSARVLRST SERKNDACNE PLNDSTAAQP AAGKGKGETL LKTDSPNIDV  300
RVLRSASGNK NEACSEPVND STSAQKAVRK RKGCRPLNDR SPKKEYVKIC QRVRYILNRM  360
NYQQSFIQAY ASEGWKGQSL EKIRPEKELE RAKEEILQCK LRIREAFRNM DAILSEGKLE  420
ESLFDSAGQI SSEDIFCGIC GSKDVTLQND IILCDGACDR GFHQNCLKPP LLTEDIPPGD  480
EGWLCPACVC KADSIDALNE LQGNKLSIHD SWEKVFPEAA SPANGSKQVG SSDLPPDRIE  540
DNDYNPPLAE GHMNQDRFSA EDDGKVDDLG LPSEDSEDDD FDPADMELDQ GMVLPISSRR  600
QVERLDYKKL YDEAYGKESS GSSDDEEWSG KELLEGSETD SHGEQLHPAK RCSRRAPAGQ  660
QNNEHTPQRE RLHGSESEQQ TKVFRSNGSS STGRKFGPIV TQKLKVHFEE DPYPSHATKE  720
NLAQELGLTF NQVCRWFSST RHYSRVASAK KEKHPDNHTS ENNDSTNVHS MQTREPSAGV  780
MEKLTLDRND IVPEKPMVQN NLNQCNKKDM PLSGTEIEME SYGQESSDSS DEEWSAFSTP  840
RKARLQDNET ASPAESLHPA KRCSRRAPDR GQNNEHTPQS EQRHGSASEQ QTDVLCSNSS  900
SSKASKYHFG PIVNQKLKAH FEKDPYPSRS TKESLAQELG LTFNQVSKWF SAIRHYSRGA  960
AAKNKKHPGK NTTENDNSTT FDGVQIREGL VEKTSTDIND MISEKLMVQI NLNEGIEEDI  1020
PPSQYTRCEE RATMTPTTIS RDVGPPGYGP GENFLQVGSR NTCEQNVITT PTPILRVDPP  1080
GYVRGENQGN DAPWNTSCEQ SMFMSSATIS REVGPPGYGP EQNQGVSMSS TTISREAGPP  1140
GYGSGENQGS GTSWNTSCEQ GMFTSPAIIS REVGPPGYGP GENQGNGTSP NTSCELRMFT  1200
SPMAISREVS LPGYEPGENQ NNGTSWNMSY KKGVFMSPTA ISREVGPPGF GPGENQGSST  1260
SWNMRCEQRM YTIPTAISRE ARPPGYGGEN QGNGASWSMS YEHGVFSSPT AISREIGPPG  1320
YGPGENQGNT TSWVTSRKQR MFTSPTTVSS EGGLPGYSIV ENQGTGGSRN IDLEQRVFVT  1380
PATISREVFP PGYNLEQRVA ATPATISREV FPPGYGPGEN QGSGASGSVR IPQGRSAEKV  1440
GFSDEARKKA IQRELRRRQK FR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325331KAVRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814927.10.0uncharacterized protein LOC112892070 isoform X3
SwissprotQ8H9911e-139HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A2S3HRR30.0A0A2S3HRR3_9POAL; Uncharacterized protein
STRINGSb03g034510.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-81Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]