PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HSF | ||||||||
Protein Properties | Length: 444aa MW: 49700.7 Da PI: 5.2618 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 95.3 | 6.4e-30 | 1 | 84 | 9 | 101 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 +++d++++ ++ w+ g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+k++ e+ weF+++ F +g+++ l++i+r+k Pahal.E01640.1 1 MVDDPATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEDFIRGQRHRLKNIHRRK 84 899******************************************************9998.........*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00447 | 7.0E-27 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.08E-29 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.2E-32 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.4E-48 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-10 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 33 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-10 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MVDDPATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN NFSSFVRQLN TYGFRKIDPE 60 QWEFANEDFI RGQRHRLKNI HRRKPIFSHS SHNQASALLA DNERREYEEE IEKLKCENAD 120 LISELEKNAE KKLDMERRMQ ELENKLIFLE DRQKNLIAYV RDIVRAPGFR SSFVQQPDHH 180 RKKRRLPIPV SLHQDANTEG NQIVHGGLTN PPVCRESFDK MESSLNTLEN FFREASEAFD 240 ISYDDGVPGP SSAVVITELH SSGESDPRVP SPPSRMHTSS AGAGDSLSRM HTSSAGAGDS 300 LSRMHTSSAG AGDSLSSHDV TESTSCAESP PLPQMQSCTD SRAKVSEIDV NLEPAITETG 360 PSRDQPAEDH PSLATGANDG FWEQFLTEQP GSNVHQEVQS ERRDGDSKDD QTRTGDRENL 420 WWGKKNVEQM TEKLGHLTSA EKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-23 | 1 | 83 | 27 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-23 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-23 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-23 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU492460 | 0.0 | EU492460.1 Pennisetum glaucum heat shock transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816815.1 | 0.0 | heat stress transcription factor A-4b isoform X1 | ||||
Swissprot | Q94J16 | 0.0 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | A0A2T8IK37 | 0.0 | A0A2T8IK37_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03132.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 2e-60 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01640.1 |
Publications ? help Back to Top | |||
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