PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01599.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 415aa    MW: 44098.3 Da    PI: 6.8783
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01599.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.71.1e-34105221189
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec.....eaesssssasnsssg. 88 
                     aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak ai+el++  ++++a+e+     e+++++ s+s      
  Pahal.E01599.1 105 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKSAIDELPDRaEAPPATEAadaaaEPAEQVTSTS----Yg 195
                     689*************************************************************9644444333222233333333333....13 PP

             TCP  89 .........................k 89 
                                              +
  Pahal.E01599.1 196 fgnpggaisgvagsfvphsvgadgvS 221
                     44455556666666666666653331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-31107237IPR005333Transcription factor, TCP
PROSITE profilePS5136932.909108166IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MASRLKLEED KNQLSKGLDP WSNNNPTATT STLHYLLQEK ERAQAQEQLQ IYHQQGFSYL  60
QHHRRQQQQQ QSRAGAGGDG VSSGESTPVD ALATAFGSGR IVRSAAGRKD RHSKVCTARG  120
LRDRRVRLAA HTAIRFYDVQ DRLGYDRPSK AVDWLIRNAK SAIDELPDRA EAPPATEAAD  180
AAAEPAEQVT STSYGFGNPG GAISGVAGSF VPHSVGADGV SGSVKSLFPS SSTASTTPAH  240
DEYRGSPPDL LSRTTSSQPQ ELCLTLQSNQ HHQIFSHVSN QNHQGMISGA GVPGWPEHGQ  300
RMPSWHASES SAGDGRGAGN GDGYMFGVQA RQGLDHQSQL FSQGEPLQSS GGWASSARTW  360
LDPLAAIHQP SAMAGQVGFS HLVGAGGGFM GFLAPAAAQR LQGEEEQGSE AMRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20113167155Putative transcription factor PCF6
5zkt_B2e-20113167155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721190.0EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815346.10.0transcription factor PCF7-like
SwissprotQ8LT051e-167PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A2T8IK720.0A0A2T8IK72_9POAL; Uncharacterized protein
STRINGPavir.Eb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-39TCP family protein