PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01581.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 240aa MW: 25665.6 Da PI: 9.6373

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01581.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.7	2.1e-37	117	171	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC s+ntkfCy+nny+++qPr+fCk C+ryWt+GGalrnvPvG+grrkn+ Pahal.E01581.1 117 PLPCPRCRSRNTKFCYFNNYNVNQPRHFCKDCHRYWTAGGALRNVPVGAGRRKNR 171 679**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-30	118	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	118	172	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	120	156	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-19	127	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MLSHVEMAPA AGGFKLFGKV ITQCAESAPP VPAQQQEPPA RSARERDDPD ERDQPMVKRE 60 AAAADHDFVE KQQHSGGGAT ESGESKGQQQ HPRPRQQQQH QDTAEARAAA AASSAPPLPC 120 PRCRSRNTKF CYFNNYNVNQ PRHFCKDCHR YWTAGGALRN VPVGAGRRKN RPLGPVVATG 180 AVPAHLHHQH RAAAAVAAAA AAAGAGFVLG FPGGQHPSSP TSPSPVYADR WPVCPDRRF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582409	1e-109	KC582409.1 Sorghum bicolor dof12 protein (dof12) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818354.1	1e-174	dof zinc finger protein 5-like
Swissprot	Q5JLR7	3e-58	DOF5_ORYSJ; Dof zinc finger protein 5
TrEMBL	A0A2S3HS18	1e-173	A0A2S3HS18_9POAL; Uncharacterized protein
STRING	Pavir.Ea02734.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	2e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.E01581.1

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]