PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01561.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 735aa    MW: 78267.1 Da    PI: 6.7249
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01561.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.28.8e-21102157156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++++eq++++e++F+++++p++++r++L+++lgL++rqVk+WFqNrR++ k
  Pahal.E01561.1 102 RKSYHRHNAEQIKAMEAVFKESPHPDEKQRQQLSQELGLSTRQVKFWFQNRRTQIK 157
                     788999**********************************************9877 PP
2START107.81.8e-3435547093206
                     EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +m+ae q l+pl p R++ f+R++++l+a++w++vdvS++  +   + ss   ++ + pSg++ie+  ng++kvtwveh+ ++ + +++++r+  
  Pahal.E01561.1 355 VMFAEVQTLTPLIPtREVHFLRHCKKLTADKWAVVDVSLEDVELDAQtSSTACKCLKKPSGCVIEEQTNGRCKVTWVEHATCRNAAVPSVYRPAA 449
                     799************************************9887776669999******************************************* PP

                     HHHHHHHHHHHHHHTXXXXXX CS
           START 186 ksglaegaktwvatlqrqcek 206
                      sgla+ga++wva+l+ qce+
  Pahal.E01561.1 450 ASGLAFGARRWVAALRLQCER 470
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-2388153IPR009057Homeodomain-like
SuperFamilySSF466897.52E-2094163IPR009057Homeodomain-like
PROSITE profilePS5007117.94599159IPR001356Homeobox domain
SMARTSM003891.7E-18101163IPR001356Homeobox domain
CDDcd000861.05E-18102160No hitNo description
PfamPF000463.2E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084826.76267473IPR002913START domain
SuperFamilySSF559612.7E-21270470No hitNo description
CDDcd088757.11E-68273469No hitNo description
SMARTSM002342.0E-22276470IPR002913START domain
PfamPF018526.4E-29277470IPR002913START domain
SuperFamilySSF559613.35E-7528668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MRACREGAEE TRRDLVLLPD MPFCWFAVRV QAGGFGRNEP AASGGEEVEF GDEGGGGIRL  60
RPGEAAEISS ENTAAGSQSG GAWSGGEEAA GHGDDGGDNK RRKSYHRHNA EQIKAMEAVF  120
KESPHPDEKQ RQQLSQELGL STRQVKFWFQ NRRTQIKATQ ERHENALLKS ELEKLQEENR  180
AMRELAKKSP RCPGCGAAAA STEEQQLRLE NAMLRAEIER LLGTLGNPAA DKLAAPASPS  240
RSARAIQPIG SGSGSVADGC GGVVGLSGHD RTRILELAGR ALCELTTMCS SGEPLWVRSV  300
ETGRDVLNYD EHVRLFQCGD DPAGDQRAGW SVEVSRETGV VYLDTTQLVN AFMDVMFAEV  360
QTLTPLIPTR EVHFLRHCKK LTADKWAVVD VSLEDVELDA QTSSTACKCL KKPSGCVIEE  420
QTNGRCKVTW VEHATCRNAA VPSVYRPAAA SGLAFGARRW VAALRLQCER MVFSMATNIP  480
TRDSTGVATL AGRRSVLKLA HRMASSLCRR SSGLASNLGG GGGGAGHGVR VTSRRNVGDP  540
GEPQGLIACA VLSAWLPVNP AALFDFLRDE SRRHEWDVML LPGRPVRSCV SVAKGKDRGN  600
CVTAYAGTSP AGDQDGVWIL QDSSTSPCES TVAYAAVDAA ALRPVIDGHD SSGVAVLPCG  660
FAVMPDGLES RPAVFTSCRK EEEDRAAAEA GGALVTVAFQ ALASPSPPDA AETVAGLAAC  720
ALGNIKRALR CEGR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPNIAATA1e-114D25322.1 Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815339.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC9-like
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A2T8IK200.0A0A2T8IK20_9POAL; Uncharacterized protein
STRINGSi004904m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein