PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 23617 Da PI: 8.9246 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.8 | 1.3e-36 | 43 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf...........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrr+C+++Cv+ap+f + + +++fa+vhk+FGasnv k+l+++p r+da+s+++yeA+ar+ dPvyG+vg+il+lq Pahal.E01466.1 43 PCGACKFLRRRCVPGCVFAPHFggggvrehragAGAGAAQFAAVHKVFGASNVAKMLSRVPVALRRDAASTVCYEAQARIADPVYGCVGTILALQ 137 7*************************988876444557********************************************************* PP DUF260 85 qqleqlkaelallkee 100 +q++ ++ael+ +++e Pahal.E01466.1 138 HQVALVQAELSIAQTE 153 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.799 | 42 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-40 | 43 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSRAMQPPGK RAGAAAAPAA AAGPAHAQAQ AAEEAPPGSP GAPCGACKFL RRRCVPGCVF 60 APHFGGGGVR EHRAGAGAGA AQFAAVHKVF GASNVAKMLS RVPVALRRDA ASTVCYEAQA 120 RIADPVYGCV GTILALQHQV ALVQAELSIA QTELLNRRLA LATVNPAYSA ASPTSQMVNC 180 GSLSQAVDFI DVEPAVRGLP PPLLPSQQPQ RGEQDGGGSP TMDVFSHNVL GK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-37 | 35 | 155 | 1 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-37 | 35 | 155 | 1 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815329.1 | 1e-165 | LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 5e-50 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2S3HRB5 | 1e-163 | A0A2S3HRB5_9POAL; Uncharacterized protein | ||||
STRING | Si004290m | 1e-113 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 6e-38 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01466.1 |