PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01439.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 27969.8 Da PI: 10.7792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.7e-10 | 116 | 164 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP+ s K K +i+ A YI++L+ Pahal.E01439.2 116 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAAGYIRELE 164 599***********************6...69*****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-14 | 111 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.027 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-10 | 114 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-7 | 116 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-6 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MADPFFYFGH DDDQDGANED YLTGLGLVLP PELPAGSAFD AYQRRRAPTL LESPLMMGRG 60 RYNNSGGGAN VHRRMFGYLR RIVRHDAAAG PVHPAPATLV PPPSQPPRPR SSSRFRHIMR 120 ERLRRERLSQ GFADLHALLP PGASSKGGKN DIVGAAAGYI RELERRKGWL RARNQELLER 180 AASRWSGGTA RNAGSGDMVV KVRAESEDRA AAVDAFETVL RRLKAMGELR VTAIRSCFCA 240 GGMWMNVGVE GQGSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 126 | RLRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818224.1 | 0.0 | transcription factor BHLH148-like | ||||
TrEMBL | A0A2S3HR71 | 0.0 | A0A2S3HR71_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J18322.1.p | 1e-116 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01439.2 |