PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 298aa MW: 32495.9 Da PI: 10.4645 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6e-10 | 116 | 164 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP+ s K K +i+ A YI++L+ Pahal.E01439.1 116 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAAGYIRELE 164 599***********************6...69*****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-14 | 111 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.027 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-10 | 114 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-7 | 116 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-6 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MADPFFYFGH DDDQDGANED YLTGLGLVLP PELPAGSAFD AYQRRRAPTL LESPLMMGRG 60 RYNNSGGGAN VHRRMFGYLR RIVRHDAAAG PVHPAPATLV PPPSQPPRPR SSSRFRHIMR 120 ERLRRERLSQ GFADLHALLP PGASSKGGKN DIVGAAAGYI RELERRKGWL RARNQELLER 180 AASRWSGGTA RNAGSGDMVV KVRAESEDRA AAVDAFETVL RRLKAMGELR VTAIRSCFCA 240 GGMWMNVGVE GQVSTREVDR AITNALMELA GNELVKKDPR SSKPSFSCQV ESGVPMG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 126 | RLRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818224.1 | 0.0 | transcription factor BHLH148-like | ||||
TrEMBL | A0A2S3HR71 | 0.0 | A0A2S3HR71_9POAL; Uncharacterized protein | ||||
STRING | Si002320m | 1e-136 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12730 | 24 | 32 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01439.1 |