PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01362.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 380aa    MW: 40151.8 Da    PI: 6.4189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01362.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.9e-062693061254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pahal.E01362.2 269 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 306
                     677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.41E-6267311No hitNo description
SuperFamilySSF474592.49E-11267319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0077268312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-9271314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MADEWWSSTS HRSHGASACS AAPLPVVTDR VACGWATSPT AAAESTSSIT FQDPYKSSTH  60
QPLSDAASSL GDPHVDWTQA FLSGRSDTSF QAVLQDDMVR AQPAADEAPA MNNPLIRDMS  120
AGFLVDHAQL APSPYGTAPS QQALFDGTAG HNISVYGDSQ SSVSYDATAS MQFSQLLKPS  180
APASGPMQGA AAAMQYLSGS YLPFGGPLQS QLLLQALQTK PGIRSSNANP LTVKDACSPA  240
ARKSAPESPA AAKRPRIEAP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHEAI  300
EYIKFLHDQV SSLSSPYLKN GIPLQNVQQK GSEDAKDSGD TKQDLRSRGL CLVPVASTYT  360
VAAETVPEFW HPTFGGTFR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-165EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817273.10.0transcription factor bHLH110-like isoform X2
TrEMBLA0A2S3HR100.0A0A2S3HR10_9POAL; Uncharacterized protein
STRINGPavir.Eb03429.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-50bHLH family protein