PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01362.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 382aa    MW: 40489.2 Da    PI: 6.6003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01362.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052713081254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pahal.E01362.1 271 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 308
                     677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-6269313No hitNo description
SuperFamilySSF474592.49E-11269321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0077270314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-9273316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MADEWWSSTS HRSHGASACS AAPLPVVTDR VACGWATSPT AAAESTSSIT FQDPYKSSTH  60
QPLSDAASSL GDPHVDWTQA FFFRSGRSDT SFQAVLQDDM VRAQPAADEA PAMNNPLIRD  120
MSAGFLVDHA QLAPSPYGTA PSQQALFDGT AGHNISVYGD SQSSVSYDAT ASMQFSQLLK  180
PSAPASGPMQ GAAAAMQYLS GSYLPFGGPL QSQLLLQALQ TKPGIRSSNA NPLTVKDACS  240
PAARKSAPES PAAAKRPRIE APSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE  300
AIEYIKFLHD QVSSLSSPYL KNGIPLQNVQ QKGSEDAKDS GDTKQDLRSR GLCLVPVAST  360
YTVAAETVPE FWHPTFGGTF R*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-165EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817271.10.0transcription factor bHLH110-like isoform X1
TrEMBLA0A2S3HR790.0A0A2S3HR79_9POAL; Uncharacterized protein
STRINGPavir.Eb03429.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-50bHLH family protein