PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01356.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 494aa    MW: 51147.2 Da    PI: 9.8355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01356.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002251273223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ Cg+ F  ++ L+ H  + H
  Pahal.E01356.1 251 SCHRCGEQFGKWEALEAHHLSkH 273
                     7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280252273IPR007087Zinc finger, C2H2
SuperFamilySSF563993.88E-22275492No hitNo description
Gene3DG3DSA:3.90.228.103.1E-12299469IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGERRRRGSA AAAAAAAGPG GCVARAPEEE KAAAAPGKGP PPPTVWFALK RSLHCRSEPS  60
EVHVPRAKAA GPAAGAGHLS SIVTKRAAPR SGCSRSIANL RDVIHGSKRH PGQPPSCSPR  120
SIGSSEFLNP IAHEVVLSTN SRCELKITGF GGCGGLGAVG TAAHDADGGA DGVGGVVSSF  180
VGTLRPGTPG PAWAGHGLPY SGSMRAGSVR CTPPRSPNVL LERNGSVAAG HRASCEENAK  240
AGASKGSGGL SCHRCGEQFG KWEALEAHHL SKHAVTELVE GDSSRKIVEI ICRTSLLKSE  300
SSCVRIERVF KVHNTQRTLS RFEEYREAVK LKASKLPKKH PRCLADGNEL LRFHGATLSC  360
ALGAGGGSSG SSSLCASDRC AVCRIIRHGF SARKEGKAGV GVFTTSTSGR AFESIEAPPA  420
GDDGEPAAAR KALLVCRVIA GRVHKPLENL REFAGQTGFD SLAGKVGPYS NIEELYLLNP  480
RALLPCFVVI CKP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2521250.0FM252125.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-1 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818591.10.0uncharacterized protein LOC112894954
TrEMBLA0A2S3HR010.0A0A2S3HR01_9POAL; Uncharacterized protein
STRINGPavir.Eb03434.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-136C2H2 family protein