PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01203.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 332aa MW: 36090.5 Da PI: 8.7278

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01203.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.9	2.9e-15	261	309	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lk + +el+k Pahal.E01203.1 261 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLK-RQKELEK 309 79***************************************9.5566655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.4E-15	255	308	No hit	No description
SMART	SM00338	4.6E-11	257	325	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.702	259	304	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.15E-25	261	309	No hit	No description
SuperFamily	SSF57959	4.13E-11	261	306	No hit	No description
Pfam	PF00170	7.6E-13	261	304	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	264	279	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MGSQTMASQA GGGGGGGSGS AGAVQRGQMQ NLARQGSLYS LTLDEVQSHL GEPLHSMNLD 60 ELLKSVFPDG LDHDGGTTSQ YEQTSSLLRQ GSITMPPELS KKTVDEVWKG IQDAPKRNVT 120 ESGRRRRERQ PTLGEMTLED FLVKAGVVTQ GYLKDLNDVG NVEPVGSAGP AGLTAGAQWL 180 DHYQHQITAI EPHQHGQHGV PGAYMPSQLA LQPLNVGPGA ILESYSEGHI TSPMMGALSD 240 SPTPGRKRGA PGDVADKLME RRQKRMIKNR ESAARSRARK QAYTNELENK VSRLEEENER 300 LKRQKELEKI LFSKPMPEPK YQLRRTGSAD F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	129	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818578.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	1e-84	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2S3HQM9	0.0	A0A2S3HQM9_9POAL; Uncharacterized protein
STRING	Pavir.Eb03523.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-85	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Pahal.E01203.1

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]