PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01167.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WOX

Protein Properties

Length: 274aa MW: 30563.1 Da PI: 6.3208

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01167.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.1e-21	94	154	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Pahal.E01167.1 94 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 154 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	7.1e-33	93	156	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Pahal.E01167.1 93 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 156 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-17	89	162	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	90	155	IPR001356	Homeobox domain
SMART	SM00389	2.7E-14	92	159	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.54E-18	93	158	IPR009057	Homeodomain-like
Pfam	PF00046	3.4E-19	94	154	IPR001356	Homeobox domain
CDD	cd00086	2.61E-14	94	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEWGDRVKEA AAAAAAADER AGGGEGLGGY VKVMTDEQME VLRKQISIYA TICEQLVEMH 60 RTLTEHQDSI AGMRFSNLYC DPLIIPGGHK ITARQRWQPT PMQLQILENI FDQGNGTPSK 120 QKIKEITAEL SHHGQISETN VYNWFQNRRA RSKRKQAAAL PNNNTESEAE VDEEALTDKK 180 PKSDRLLHEN KAMNVHSAER ISGMHHFDAD HDQIGGMMYG SNENGMRSSG GSGQMSFYEN 240 IMSNPRIDHF PGKVESSRSF SHLQHGEGFD MFG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063919	0.0	BT063919.1 Zea mays full-length cDNA clone ZM_BFc0120C21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815130.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-136	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2S3HQI6	0.0	A0A2S3HQI6_9POAL; Uncharacterized protein
STRING	Sb03g038080.1	1e-179	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-61	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Pahal.E01167.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]