PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01126.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 251aa    MW: 25983.3 Da    PI: 6.6198
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01126.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.3e-40571561100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C++apyf  ++p+kfa+vhk+FGasnv+k+l ++ e  r da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+
  Pahal.E01126.1  57 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLDVAEGVRADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNALEAELE 151
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  Pahal.E01126.1 152 AVRAE 156
                     99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.57656157IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-4057154IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSTERERLDE IGKKIKREPD TAALALAAAS ASTAPADNRA PRRLGLGLGG ALNTVTPCAA  60
CKLLRRRCAQ ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLDVAEGVR ADAASSLVYE  120
ANLRLRDPVY GCMGAISVLQ QQVNALEAEL EAVRAEILKH RYRQAGAGAG LVDDARATAS  180
FAAPAPAPVH AGDVVSVVEA GQEVACGGAA GAPGMSASSA VYVAEAEQQP SSTTDHYSSL  240
NPSEHAAYFG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-415716011114LOB family transfactor Ramosa2.1
5ly0_B4e-415716011114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686991e-170BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818142.10.0LOB domain-containing protein 15-like
SwissprotQ8L5T55e-70LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A2S3HQG21e-180A0A2S3HQG2_9POAL; Uncharacterized protein
TrEMBLA0A2T7DF461e-180A0A2T7DF46_9POAL; Uncharacterized protein
STRINGPavir.Eb03580.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.16e-63LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]