PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01126.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 25983.3 Da PI: 6.6198 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.3 | 7.3e-40 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e r da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+ Pahal.E01126.1 57 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLDVAEGVRADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNALEAELE 151 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Pahal.E01126.1 152 AVRAE 156 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.576 | 56 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-40 | 57 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSTERERLDE IGKKIKREPD TAALALAAAS ASTAPADNRA PRRLGLGLGG ALNTVTPCAA 60 CKLLRRRCAQ ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLDVAEGVR ADAASSLVYE 120 ANLRLRDPVY GCMGAISVLQ QQVNALEAEL EAVRAEILKH RYRQAGAGAG LVDDARATAS 180 FAAPAPAPVH AGDVVSVVEA GQEVACGGAA GAPGMSASSA VYVAEAEQQP SSTTDHYSSL 240 NPSEHAAYFG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 57 | 160 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 57 | 160 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068699 | 1e-170 | BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818142.1 | 0.0 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 5e-70 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2S3HQG2 | 1e-180 | A0A2S3HQG2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DF46 | 1e-180 | A0A2T7DF46_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03580.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 6e-63 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01126.1 |
Publications ? help Back to Top | |||
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