PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 19588.6 Da PI: 5.9697 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Pahal.E01021.1 59 FECKTCSKRFPSFQALGGHRTSH 81 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00068 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H Pahal.E01021.1 105 HECAVCGLEFSMGQALGGHMRRH 127 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.14E-6 | 56 | 83 | No hit | No description |
Pfam | PF13912 | 4.2E-12 | 58 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.23E-7 | 102 | 133 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 103 | 132 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.2E-11 | 104 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.217 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.89 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MTLTRHEAEE SKEMEGLRAH AVALLSLSSS PEPAASGGGD SRPPASASSR RAMAAEGVFE 60 CKTCSKRFPS FQALGGHRTS HTRLQARMLS DAAAAGAERD RTRVHECAVC GLEFSMGQAL 120 GGHMRRHRGE APLAAHDDGA AHPDQAMPDL NFPPLEDGDG GGGSDGGQDQ QPSADHSSEP 180 QLLNLLV* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971116 | 1e-101 | EU971116.1 Zea mays clone 357761 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817787.1 | 1e-131 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2S3HQN8 | 1e-130 | A0A2S3HQN8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J14338.1.p | 4e-72 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01021.1 |