PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00941.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 401aa    MW: 42929.8 Da    PI: 5.4368
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00941.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-1895140147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+W++eEd  l ++v++lG ++W++Iar ++ gR++k+c++rw + 
   Pahal.E00941.1  95 RGPWSPEEDAVLSNLVEKLGARNWTLIARGIP-GRSGKSCRLRWCNQ 140
                      89******************************.***********985 PP
2Myb_DNA-binding48.52e-15147191147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd ++  a++ +G++ W+ Ia+ +  gRt++ +k++w++ 
   Pahal.E00941.1 147 RKPFTEEEDRIIMAAHAVHGNK-WACIAKLLD-GRTDNAIKNHWNST 191
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.11590145IPR017930Myb domain
SuperFamilySSF466891.73E-3093188IPR009057Homeodomain-like
SMARTSM007177.4E-1594143IPR001005SANT/Myb domain
PfamPF002494.7E-1795140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2696148IPR009057Homeodomain-like
CDDcd001672.73E-1497139No hitNo description
SMARTSM007171.8E-13146194IPR001005SANT/Myb domain
PROSITE profilePS5129421.771146196IPR017930Myb domain
PfamPF002493.2E-13147191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-23149195IPR009057Homeodomain-like
CDDcd001672.46E-10149192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSAPETAVSP APQPPSDPPA DDDADADAAH SNSTPMAVET RTLTEPPPQP QSLQASPPPS  60
GEDDDVVVVS GASVGGDAAA SAASAGNATM DERVRGPWSP EEDAVLSNLV EKLGARNWTL  120
IARGIPGRSG KSCRLRWCNQ LDPQVKRKPF TEEEDRIIMA AHAVHGNKWA CIAKLLDGRT  180
DNAIKNHWNS TLRRRHCNDG QCKHGVSVER SIPEVSRAVS EESWPLKDLS SFTAMDVRDA  240
PVQTVTETSA GAWLIPDQCY STQAVDPPYL SRPVAKIGAF RPYNLGHVSE PTQQETPSSV  300
FKRDSTLKAL TPESEVFKFA DPTCFAAGVP NKCGHGCSSA HKRTRKNSLL GPEFYEFEDH  360
PPILSSSFAS LVSEISSIAW MRSGMQSGDA SSLLQSAPPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-40941956107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814267.10.0transcription factor MYB1-like
TrEMBLA0A2S3HQH50.0A0A2S3HQH5_9POAL; Uncharacterized protein
STRINGPavir.J13677.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.16e-81myb domain protein 109