PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00891.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 446aa    MW: 47737.2 Da    PI: 4.7919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00891.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-18115161148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd  l+d v+q+G + W+ I++ ++ gR +kqc++rw ++l
   Pahal.E00891.1 115 KGTWTEEEDSVLKDMVTQHGERKWSVISQSLP-GRIGKQCRERWINHL 161
                      799*****************************.************996 PP
2Myb_DNA-binding46.21.1e-14171210445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      WT+e+d+ l+ a+k +G++ W++Iar ++ gR+++ +k++w+
   Pahal.E00891.1 171 WTEEDDKMLIGAHKYFGNR-WSSIARFLP-GRSENAVKNHWN 210
                      *******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-22110164IPR009057Homeodomain-like
PROSITE profilePS5129425.827110165IPR017930Myb domain
SMARTSM007171.3E-15114163IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-29114209IPR009057Homeodomain-like
PfamPF002492.0E-15115161IPR001005SANT/Myb domain
CDDcd001671.57E-14117161No hitNo description
Gene3DG3DSA:1.10.10.602.6E-16165212IPR009057Homeodomain-like
SMARTSM007171.0E-10167215IPR001005SANT/Myb domain
PROSITE profilePS5129415.051167217IPR017930Myb domain
PfamPF002491.3E-12171210IPR001005SANT/Myb domain
CDDcd001677.59E-12171210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAFNNSILVN RVLASVLTED EAAVSYLASS SHGGPQFEHN LVAPSSMQAG GAQFMDAPLD  60
VSSLVASIGM TPAGFEMPEG AIVASGYNTL GGVPIDVEEI PQPQTGSNDK PTSFKGTWTE  120
EEDSVLKDMV TQHGERKWSV ISQSLPGRIG KQCRERWINH LRPDIRQNDI WTEEDDKMLI  180
GAHKYFGNRW SSIARFLPGR SENAVKNHWN ATRRSLKAKR RLKKKKSEQQ VPPGQLSVLE  240
EYIRSLPPAS ESAAPPPAAS PPLQGPAYSG PIVPEAAHPP APEMEMNFNA ANPAGPPLSR  300
HLPGMINHNM PQLPDLNISC DPQEAGYMSY AMYAPSPAPQ LQLVTQDPQQ ATFSWFPFVE  360
YLTALNTGLA AGPSYYAGGS SSNAGASGYY SGAGAGYYYS EAGPSNAGGS GGEPAGDTGD  420
VVELASREFL TPSNDEATLD LTRFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-391152144102MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-391152144102C-Myb DNA-Binding Domain
1msf_C2e-391152144102C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814296.10.0transcription factor MYB77-like
TrEMBLA0A2S3HPX20.0A0A2S3HPX2_9POAL; Uncharacterized protein
STRINGPavir.J05795.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-41myb domain protein 98