PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00845.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 267aa MW: 28752.9 Da PI: 5.1666

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00845.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.9	2.7e-42	6	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+P +Lp ++e + w++F++r++++++g r++r+t sgyWka g+ Pahal.E00845.1 6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPGQLPGihemlcGGAGEGEPWFYFCPRQERETRGGRPSRTTPSGYWKAAGTP 100 79**************************99************545665422336779**************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+kkt+vfy+grap+g kt+W m+eyr+ Pahal.E00845.1 101 GVVYSSaDRRAIGVKKTMVFYRGRAPSGAKTNWKMNEYRA 140 9978889*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-47	3	146	IPR003441	NAC domain
PROSITE profile	PS51005	46.909	6	186	IPR003441	NAC domain
Pfam	PF02365	6.7E-24	7	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPG QLPGIHEMLC 60 GGAGEGEPWF YFCPRQERET RGGRPSRTTP SGYWKAAGTP GVVYSSADRR AIGVKKTMVF 120 YRGRAPSGAK TNWKMNEYRA LQYYAAPAAA GTDGSPSSAH AHAAAARPNV PPQLRSEFSL 180 CRLYTRSGTL RQFDRRPLAA AAGVPGEDPG PSTAAAASPP EDDDGSGSSM QQQQQQLVAE 240 RGSADDPYGD DAAILDALLY WPGDET*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-31	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-31	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-31	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-31	1	142	12	144	NO APICAL MERISTEM PROTEIN
3swm_A	6e-31	1	142	15	147	NAC domain-containing protein 19
3swm_B	6e-31	1	142	15	147	NAC domain-containing protein 19
3swm_C	6e-31	1	142	15	147	NAC domain-containing protein 19
3swm_D	6e-31	1	142	15	147	NAC domain-containing protein 19
3swp_A	6e-31	1	142	15	147	NAC domain-containing protein 19
3swp_B	6e-31	1	142	15	147	NAC domain-containing protein 19
3swp_C	6e-31	1	142	15	147	NAC domain-containing protein 19
3swp_D	6e-31	1	142	15	147	NAC domain-containing protein 19
4dul_A	5e-31	1	142	12	144	NAC domain-containing protein 19
4dul_B	5e-31	1	142	12	144	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-138	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818071.1	0.0	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2S3HPP4	0.0	A0A2S3HPP4_9POAL; Uncharacterized protein
STRING	Si002586m	1e-148	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-65	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Pahal.E00845.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]