PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00688.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MIKC_MADS

Protein Properties

Length: 269aa MW: 29814.6 Da PI: 9.2357

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00688.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.7	8.6e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELS+LCdae+a++ifss+g+lyeyss Pahal.E00688.1 9 KRIENTTSRQVTFCKRRNGLLKKAYELSILCDAEIALVIFSSRGRLYEYSS 59 79***********************************************96 PP
2	K-box	106.9	2.4e-35	80	174	8	100
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ + +++ qqe+akL ++i++Lq+++Rhl+Ge++++++ keL+++e++Le+++ +iRskK+elll+ ie++qk+e elq+en+ Lr+k++e Pahal.E00688.1 80 ApvVDVNSHQYFQQEAAKLHQQIQTLQNSNRHLMGESIGNMTAKELKSIESRLERGIGRIRSKKHELLLADIEYMQKREAELQSENMFLRAKVAE 174 445778899***********************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.571	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.00E-45	2	75	No hit	No description
SuperFamily	SSF55455	2.35E-32	2	74	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-32	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	7.0E-28	85	172	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.861	88	178	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSILCD AEIALVIFSS RGRLYEYSSN 60 SVRSTIERYK KASASTSGTA PVVDVNSHQY FQQEAAKLHQ QIQTLQNSNR HLMGESIGNM 120 TAKELKSIES RLERGIGRIR SKKHELLLAD IEYMQKREAE LQSENMFLRA KVAEAERAQQ 180 EAAEDQQMAP PPDVAEATTE LQALPASLDP RGYYLQAQAS MMAAASAAAA SSSSQHQQGQ 240 QEHHHLQTAL HLGYHIKVDS AAASKGFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
5f28_A	1e-20	1	69	1	69	MEF2C
5f28_B	1e-20	1	69	1	69	MEF2C
5f28_C	1e-20	1	69	1	69	MEF2C
5f28_D	1e-20	1	69	1	69	MEF2C
6c9l_A	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817347.1	0.0	MADS-box transcription factor 21-like
Swissprot	Q8RU31	1e-131	MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBL	A0A2S3HP95	0.0	A0A2S3HP95_9POAL; Uncharacterized protein
STRING	Si002551m	1e-169	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP649	37	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42830.1	1e-88	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Pahal.E00688.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710]