PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00672.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 410aa    MW: 43729.7 Da    PI: 9.132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00672.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.1e-50441692128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++ + +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++
  Pahal.E00672.1  44 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMSAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRAEN 137
                     79***************************.89***************8777899***************************************** PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +glkktLvfy+g+apkg++++W+m+eyrl
  Pahal.E00672.1 138 QRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 169
                     ******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-5643189IPR003441NAC domain
PROSITE profilePS5100555.3943190IPR003441NAC domain
PfamPF023651.6E-2445169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSGRHENGHG AAAAAAAAAV AAGGGGGGRA GDGGGDAHED DLVMPGFRFH PTEEELIEFY  60
LRRKVEGKRF NVELITFLDL YRYDPWELPA MSAIGEKEWF FYVPRDRKYR NGDRPNRVTT  120
SGYWKATGAD RMIRAENQRP IGLKKTLVFY SGKAPKGVRS SWIMNEYRLP PDDTDRYQKT  180
EISLCRVYKR TGIDDGHGHP SARSTPSRRA AAQQDIKQAS SSSTPTPPTT PSKIVHLLHG  240
ECTSAPTTRD HAAAHNKAAA QRQLPTKPCS GGYQLSATSS AASAGADQQQ VGTAAMPSSY  300
EQSRNANAFA STYSLLSLVN AASMGGSAAA AIDELSTLVG VGHGPPAYFN HQAGGGHSHS  360
FLPLPTTPSS QPVALGTLPM SLAAISDKIW DWNPIPDAAA RDYSSAGFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-544519019165NO APICAL MERISTEM PROTEIN
1ut4_B7e-544519019165NO APICAL MERISTEM PROTEIN
1ut7_A7e-544519019165NO APICAL MERISTEM PROTEIN
1ut7_B7e-544519019165NO APICAL MERISTEM PROTEIN
4dul_A7e-544519019165NAC domain-containing protein 19
4dul_B7e-544519019165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12634GGRAGDGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814617.10.0NAC domain-containing protein 35
TrEMBLA0A2S3HPF50.0A0A2S3HPF5_9POAL; Uncharacterized protein
STRINGSi001651m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-101NAC domain containing protein 35