PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00617.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 890aa    MW: 99107.8 Da    PI: 8.1572
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00617.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.51.2e-53501625117
            CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                     k+rwlk++e+++iL n++ + ++++++++p+sgs++L+nr+++ryfr+DGy+w+kkk+gktv+E+he+LKv++v++l+cyYa++++nptfqrr+y
  Pahal.E00617.1  50 KTRWLKPQEVLQILRNHDLFMVSHKPPQKPPSGSWFLFNRRVLRYFRNDGYEWQKKKNGKTVNEAHERLKVDNVDALNCYYARGDKNPTFQRRIY 144
                     89********************************************************************************************* PP

            CG-1 100 wlLeeelekivlvhylev 117
                     w+L+ ++e+ivlvhy++v
  Pahal.E00617.1 145 WMLDPAYEHIVLVHYRDV 162
                     ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.58342168IPR005559CG-1 DNA-binding domain
SMARTSM010769.0E-6645163IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-4950162IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.91E-11344427IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.105.0E-6344429IPR013783Immunoglobulin-like fold
CDDcd001024.00E-4345429No hitNo description
CDDcd002041.11E-8516598No hitNo description
SuperFamilySSF484032.49E-13537640IPR020683Ankyrin repeat-containing domain
PfamPF136377.6E-10550602No hitNo description
PROSITE profilePS5029715.194553613IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.6E-14553645IPR020683Ankyrin repeat-containing domain
SMARTSM002483.3E-4581610IPR002110Ankyrin repeat
PROSITE profilePS5008810.927581613IPR002110Ankyrin repeat
SuperFamilySSF525406.37E-8705795IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0066744766IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.309745774IPR000048IQ motif, EF-hand binding site
PfamPF006120.015746765IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0017767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578768796IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021769789IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MMRQPLAATP LPLVAELDLK RRLLQRGDNA GGAAIAYPGL DVHKLQQVVK TRWLKPQEVL  60
QILRNHDLFM VSHKPPQKPP SGSWFLFNRR VLRYFRNDGY EWQKKKNGKT VNEAHERLKV  120
DNVDALNCYY ARGDKNPTFQ RRIYWMLDPA YEHIVLVHYR DVLEGSISVS ARNDSSTSNQ  180
NGSASRAEVH SSPGWTSEFV LPCPNSSSPG SAEEVSSRTV TINNETNRSG SDWIQHKAAL  240
RKLEMQLSLE DKEDSNVLAE EVPTNIEHVI VPGIQTGEPG SSANFEDIFN VLDFSRDHTK  300
ENGTDPCPSA IDVLKNSDTW LEEDQLEAIL HPASMAPTEN LWFNIHEVSP ESAFSSEITK  360
VIVLGDFLCN PSHSSLAMLF GDVKVPVEII QQGAIRCHTP CLNAGKVSMC LIDGNGKPCS  420
EAREFEFHEK PTKSMVDGNE KPCNEAQDIK VHKTPTKSND ELLLLLNYVQ ILFGHGCDVF  480
SKFSPQLPNP GCGFLVNQMD IMRKTYEQLD PEKTVYSVME VLLNDKFKQW LLSKCEQNSD  540
GNHLLPKQYH GVIHTIAALG YDLALKPLLS SGVPINYRDG NGWTALHWAA RFGREDMVVA  600
LLTAGAAAGA LSHPTSEDPA AKTPASIALA FGFKGLSAFL SEEQLTTHLD SIESKENGKC  660
EGNASGGGIR SAVDRISDKS THVHGGTDDQ LALKDSLGAV RNAVQAAARI QAAFRVFSFK  720
KKKETALQNS CLSVHETVAV SHGMLERAAL SIQKNFRCWK KRKEFLKLRK NVIKIQARVR  780
AHQERKKYKE LIRSVGVLEK VMLRWYRKGV GLRGFNSGAM PVDEEVEEDV AKVFRKLRVE  840
TAIDEAVSRV SCIIGSPKAM QQYRRMLQRY QQAKVNIPKD ASEVPTSKG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816190.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A2S3HNI70.0A0A2S3HNI7_9POAL; Uncharacterized protein
STRINGPavir.J03014.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-98Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains