PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00490.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 298aa    MW: 31782.8 Da    PI: 4.6353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05272295123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C+ C+k+F + s L++H +  H
  Pahal.E00490.1 272 HACKTCSKTFGSESALESHKKAkH 295
                     67*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.62E-5261294No hitNo description
PROSITE profilePS5015711.053272297IPR007087Zinc finger, C2H2
SMARTSM003550.0061272295IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-6272296IPR007087Zinc finger, C2H2
PROSITE patternPS000280274295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFWGEEVKP GTKVSCKADE GYVIHLSQAA LGETKKGSEN VVVSVKVDDK KLVLGTLSAE  60
KHPQIMCDLI FNSYFELSHS SKTTSVFLCG YKSQIPVFED DSGDDEISSD EELETDEIPI  120
KKDEITKAAV PVKDGKNAKQ DVDEEMSSGD DGFSDGSDGS EMSEDESSDE ETSSGADLSG  180
DSEDESDESE EEQTPTPKKP DLGGKKRAIE AVTPSGKKAK VEPSGQKTGD KKGHVSTPHP  240
TKQASKTPAD KSGKTPATDK KSKEKSPKSG SHACKTCSKT FGSESALESH KKAKHEA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817613.10.0histone deacetylase HDT2-like
TrEMBLA0A2S3HPE00.0A0A2S3HPE0_9POAL; Uncharacterized protein
TrEMBLA0A2T7DCT10.0A0A2T7DCT1_9POAL; Uncharacterized protein
STRINGSi004270m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-18histone deacetylase 3