PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00426.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 355aa    MW: 37788.2 Da    PI: 8.299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00426.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12288332654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +++Er RR ri +++ +L++l+P+     +k  + +++L +AveYIk+L
  Pahal.E00426.1 288 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEYIKEL 332
                     689*********************7....688***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-15285342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-12286337No hitNo description
Gene3DG3DSA:4.10.280.102.9E-15287343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-10288332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNRLTPAHHG AMPPPGPGQL ARYGSAPGSL LASIAESVTR GGDHAPPPVS RFYSAESSGL  60
TSCESSCRTD GGGGRPRALE RAYGGSGEIR VPPPPQPQQH QSLAPPGPPH GLLRHSSSPA  120
GLLSRLMADP HGMAPARGMG SYSQAGTDAA MAHGHRQLSS QWSFSRQDLP QISEMGMIPD  180
IGESIVAGGC NSSSDGGGAA QSSSYLSRNF SVSSWDDTNS IMFSSPTKKH KLDAADDMVT  240
SFSNIDSQFG LSKSSLEMPG MDDYLQLQQD SIACRVRAKR GCATHPRSIA ERERRTRISK  300
RLKKLQDLVP NMDKQTNTSD MLDLAVEYIK ELKGQVEKLK HDQANCFCSG TQNS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.10.0transcription factor bHLH128-like
TrEMBLA0A2S3HP780.0A0A2S3HP78_9POAL; Uncharacterized protein
STRINGPavir.J01306.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-56bHLH family protein