PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00418.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 713aa    MW: 75073.3 Da    PI: 9.1594
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00418.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11267323155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Pahal.E00418.1 267 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 323
                     57*******************4444.2455535555.779999**************98 PP
2AP246.78.2e-15366417155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.E00418.1 366 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 417
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-15267333IPR016177DNA-binding domain
CDDcd000184.05E-17267333No hitNo description
PfamPF008475.3E-9267323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-12268332IPR001471AP2/ERF domain
PROSITE profilePS5103217.385268331IPR001471AP2/ERF domain
SMARTSM003804.0E-23268337IPR001471AP2/ERF domain
PRINTSPR003673.8E-6269280IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17366427IPR016177DNA-binding domain
CDDcd000183.39E-22366427No hitNo description
PfamPF008471.0E-9366417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18367426IPR001471AP2/ERF domain
SMARTSM003801.5E-33367431IPR001471AP2/ERF domain
PROSITE profilePS5103219.045367425IPR001471AP2/ERF domain
PRINTSPR003673.8E-6407427IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQDLPPS QTDSTLISAA ATDEVSGDVC FNIPQDWGMR GSELSALVSE  60
PKLEDFLGGI NFSEQHHKAN LNVIPSSSST CYASSGASTG YHHQLYHHPS SALHFADSVM  120
VASSAGVHDG GAMLSAAAAN GGAGAAGANG GSIGLSMIKN WLRSQPAPPP QPRVAVAEGA  180
QAAQGLSLSM NMAGTQGAGM PLLAGERGRA PESVSTSAQG GAVAARKEDS GGAGALVAVS  240
TDTGGSGGAS AETVARKTVD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQTRKGR  300
QGGYDKEEKA ARAYDLAALK YWGPTTTTNF PVSNYEKELE EMKHMTRQEF VASLRRKSSG  360
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA  420
VTNFDMSRYD VKSILDSSAL PIGSAAKRLK EAEAAASAQH HAGVVSYDVG RIASQLGDGG  480
ALAAYGAHYH AAAAAAWPTI AFQPGATAGL YHPYAQPLPR GWCKKEQDHA VIAAAHSLQE  540
LNHLNLGAGA HDFFSAGQAA MHGLGSIDNS SLEHSTGSNS VVYNGVGDSN GGAVGGGYMM  600
TMSAAAATTT AMVSHEQVHA RAQGDHDEAS KHAAQMGYES YLMNAEAAYG GGRMPSWTRP  660
RLHRWRRRQA ATTTWPALAM AARSSSVSGM TLNKLRTPTR HRGKKYADIS NT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818612.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A3L6RJ650.0A0A3L6RJ65_PANMI; AP2-like ethylene-responsive transcription factor BBM2
STRINGPavir.J01327.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-116AP2 family protein