PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00227.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SRS

Protein Properties

Length: 359aa MW: 36545.2 Da PI: 7.8351

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00227.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222	1.2e-68	123	290	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsst 89 +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq +a+ s++++ ++ +++ask++r ++q+++s+t Pahal.E00227.3 123 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAASGSASSSPATasaaavaSASASKKPRL--LSSQTTTSHT 215 57889********************************************99988765544333334677555556666665..58999999 PP DUF702 90 klssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+a+++++++t+s lP++v+++avf+cvrv+s++dge+e+aYq+ v+i+Gh+fkG+LydqG+++ Pahal.E00227.3 216 STSNATTPRSFDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIEDGEDEYAYQAMVTINGHLFKGFLYDQGPDD 290 **********99999******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-63	126	289	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.0E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-27	241	288	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MRQAAALNYG MADVGMVVVA PAASFHHTHH HHHHHEAAAA AAAAAAADPI FPLLSGGPCV 60 LDPDAAKSGS GAPPGSAIQF WQPQPPPQSP SSAAGANPNP SASPFAYLKK PLPMLDTGAG 120 SSGSGATTCQ DCGNQAKKDC GHNRCRTCCK SRGFDCSTHV KSTWVPAARR RERQQLAASG 180 SASSSPATAS AAAVASASAS KKPRLLSSQT TTSHTSTSNA TTPRSFDTTS SHQDASFRDS 240 LPRQVRAPAV FKCVRVTSIE DGEDEYAYQA MVTINGHLFK GFLYDQGPDD GRHAATSNED 300 STAGVPNISE LHLGAASASG AGGSGVKEGG SSMVPTELYG GGGQHHILGG SGYGNTMN*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MRQAAALNYG MADVGMVVVA PAASFHHTHH HHHHHEAAAA AAAAAAADPI FPLLSGGPCV  60
LDPDAAKSGS GAPPGSAIQF WQPQPPPQSP SSAAGANPNP SASPFAYLKK PLPMLDTGAG  120
SSGSGATTCQ DCGNQAKKDC GHNRCRTCCK SRGFDCSTHV KSTWVPAARR RERQQLAASG  180
SASSSPATAS AAAVASASAS KKPRLLSSQT TTSHTSTSNA TTPRSFDTTS SHQDASFRDS  240
LPRQVRAPAV FKCVRVTSIE DGEDEYAYQA MVTINGHLFK GFLYDQGPDD GRHAATSNED  300
STAGVPNISE LHLGAASASG AGGSGVKEGG SSMVPTELYG GGGQHHILGG SGYGNTMN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966498	0.0	EU966498.1 Zea mays clone 294888 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818814.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	6e-63	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2S3HN06	0.0	A0A2S3HN06_9POAL; Uncharacterized protein
STRING	Pavir.Eb03954.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	7e-48	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Pahal.E00227.3

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]