PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00161.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 23978.8 Da PI: 7.4115 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.2 | 1.1e-17 | 26 | 153 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk..atgkdkevlskkgel 99 F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++ +++ +fF+ r + + + ++ ++ +g W +t ++v++ + + Pahal.E00161.1 26 FEPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCAAAPWELLARYGL-RDQGHFFAARGRGRGRPSVRRAVAGAGAWMhsSTRAGRSVTDLGVVV 119 9***********************999**************855544.56789*****9987765544448889***844567789999988999 PP NAM 100 vglkktLvfy......kgrapkgektdWvmheyrl 128 + + + fy + + ++t Wvm+ey++ Pahal.E00161.1 120 RWSRVKFCFYaggpagA-GQGQQRSTGWVMEEYEI 153 999*******6665422.3334469********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.296 | 20 | 180 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.24E-28 | 25 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-11 | 26 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEDEEPNLSA EEDGADHLAA GDLGGFEPTE DELVLHFLRP QLRGFPPRVA GAVLEADPCA 60 AAPWELLARY GLRDQGHFFA ARGRGRGRPS VRRAVAGAGA WMHSSTRAGR SVTDLGVVVR 120 WSRVKFCFYA GGPAGAGQGQ QRSTGWVMEE YEITDPRCYR RCDEEGEEDD YWVLCRVRKS 180 KRPAAASPPA RQRWRRLDEL EPDSGAKAKI SRPLRT* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816116.1 | 1e-155 | NAC domain-containing protein 18-like | ||||
TrEMBL | A0A2S3HN47 | 1e-154 | A0A2S3HN47_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea04027.1.p | 1e-106 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00161.1 |