PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00068.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 420aa    MW: 46241.7 Da    PI: 4.6445
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00068.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1684144155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +    ++ k+ ++++lg ++t+e Aa+a++ a++k++g
  Pahal.E00068.1  84 SVYRGVTRHRWTGRFEAHLWDkHCLtslQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 144
                     78*******************9988888445445*************************98 PP
2AP2574.9e-18187239156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Pahal.E00068.1 187 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 239
                     89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1784153IPR016177DNA-binding domain
PfamPF008474.3E-1484144IPR001471AP2/ERF domain
CDDcd000183.61E-1284153No hitNo description
Gene3DG3DSA:3.30.730.101.8E-1785153IPR001471AP2/ERF domain
SMARTSM003802.9E-2885158IPR001471AP2/ERF domain
PROSITE profilePS5103220.8985152IPR001471AP2/ERF domain
PRINTSPR003673.3E-68697IPR001471AP2/ERF domain
PfamPF008471.6E-13187238IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-18187248IPR016177DNA-binding domain
CDDcd000181.78E-26187248No hitNo description
Gene3DG3DSA:3.30.730.107.5E-19188246IPR001471AP2/ERF domain
SMARTSM003803.2E-26188252IPR001471AP2/ERF domain
PROSITE profilePS5103219.032188246IPR001471AP2/ERF domain
PRINTSPR003673.3E-6228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MERRSPQPSP PPVSSPPSSS SSSSISIEEI PTRKRARARA RTQAKGADKP KRPRKEAPRQ  60
TQSKEDPADP APNAAAAASG KRSSVYRGVT RHRWTGRFEA HLWDKHCLTS LQNKKKGRQV  120
YLGAYDTEEA AARAYDLAAL KYWGPETVLN FPAEDYSGEM SEMEGVSREE YLASLRRRSS  180
GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTFD TQEEAAKAYD LAAIEYRGAN  240
AVTNFDISCY LDHPLLLAQL QQEPQVVPAL NQEPQPDQSE TTVQESDSSE AKTPDDNAEP  300
DDNAEPDANA QPDDNAEPLT VDAVIEESLW SPCMDYELDI MSRSNFGSSI NLSEWFTDAD  360
FGSDIGCLFD GCSAVDEGSK DGVGLADFSL FEEGDGKQKD VISDMEEGIH PSTMISVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955PKRPRKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826706.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2S3IC860.0A0A2S3IC86_9POAL; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-77AP2 family protein